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Conventional proteomics research relies on three dimensions post proteolytic digestion: retention time, mass-to-charge ratio (m/z), and peptide ion intensity. With the development of Trapped Ion Mobility Spectrometry (TIMS) and Parallel Accumulation Serial Fragmentation (PASEF) techniques, ion mobility dimension was added as the forth separation dimension, making 4D proteomics technology the latest quantitative approach.

Based on Bruker timsTOF Pro2 platform, 4D-DIA Proteomics significantly improves the scanning speed and detection sensitivity, as well as enhances 4D proteomics analysis performance in terms of identification depth and quantitative accuracy with less sample input.

The Optimal Choice for 4D Proteomics Analysis of Large-Cohort Samples


4D Proteomics


  • High sensitivity: Nearly 100% ion utilization, greatly improving detection sensitivity.

  • Deeper protein identification: Protein identification level has increase by 20%, 6000+ cells per needle (200 ng 293T cells).

  • Higher integrity and reproducibility of protein area

  • Smaller sample size required: Suitable for rare and minimal samples: FFPE, tissue biopsies, immune cells……


4D-DIA Proteomics Project Workflow


4D Proteomics


4D-DIA Proteomics Sample Requirements

Sample type

Sample

Recommended Volume

Body fluid

Plasma. serum

0.05~0.2 mL

Urine

50~100 mL

Cerebrospinal fluid, synovial fluid, ascites……

0.05~5 mL

Animal or human milk

2~50 mL

Animal tissue

Brain, heart, liver, spleen, lungs, kidneys, muscles, skin, or other tissues

15 mg~2 g

Plant tissue

Soft tissues of woody and herbaceous plants

50 mg~2 g

Cells

Cells

0.5×107~1×107

Special sample

FFPE

5-10 µm thick, 50 mm2 size, ≥10 slices

Biopsy or puncture tissue

1-3 needles, visible to the naked eye, the size of millet grains

* Please ensure proper pre-processing and storage methods for the samples.

* Please contact info@inomixo.com if you have any questions regarding the samples.

4D-DIA Proteomics Analysis Content Display

identified protein box plot
3d pca
ppi network

INOMIXO can provide a variety of bioinformatics and customized analysis. For more proteomics analysis needs, please contact info@inomixo.com.

4D-DIA Proteomics Support Documents

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